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See other TRMT2A CNV Assays ›
Gene Symbol
TRMT2A
Assay Reference Genome
Location

Chr.22:20112025 on build GRCh38
Cytoband
22q11.21
Assay ID Hs02008143_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:

 27037

Gene Name:

 tRNA methyltransferase 2 homolog A

Gene Aliases:

 HTF9C

Location:

 Chr.22:20111866-20117305 on Build GRCh38

Assay Gene Location:

 Within Exon 12
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRMT2A NM_001257994.1 12 2827 NP_001244923.1
NM_022727.5 12 2805 NP_073564.3
NM_182984.4 13 2681 NP_892029.2
XM_011530139.2 13 2666 XP_011528441.1
XM_011530141.1 11 2041 XP_011528443.1
XM_011530142.2 9 1699 XP_011528444.1
XM_017028770.1 12 2869 XP_016884259.1
AI539558.1 1 163
BC017184.2 13 2567 AAH17184.2
BX349507.2 1 122
CA440188.1 1 177

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv726n67 Chr.22:20070444 - 20324465 on Build GRCh38 Gain MIR1306 LOC284865 DGCR8 MIR3618 RANBP1 ZDHHC8 MIR6816 LOC440792 RTN4R LINC00896 DGCR6L CCDC188 TRMT2A MIR1286
esv3647284 Chr.22:19985583 - 20137122 on Build GRCh38 Gain MIR1306 MIR185 ARVCF DGCR8 MIR3618 RANBP1 TANGO2 ZDHHC8 TRMT2A MIR6816
esv3893434 Chr.22:19470889 - 20343372 on Build GRCh38 Gain SEPT5-GP1BB MIR185 C22orf29 DGCR8 MIR3618 RANBP1 ZDHHC8 TBX1 MIR6816 MIR4761 CDC45 CCDC188 COMT MIR1306 GP1BB LOC284865 LOC101927859 GNB1L UFD1L LOC440792 RTN4R LINC00896 SEPT5 ARVCF DGCR6L TXNRD2 LINC00895 TANGO2 CLDN5 TRMT2A MIR1286
esv2758825 Chr.22:20038970 - 20321924 on Build GRCh38 Loss MIR1306 LOC284865 DGCR8 MIR3618 RANBP1 ZDHHC8 MIR6816 LOC440792 RTN4R LINC00896 DGCR6L TANGO2 CCDC188 TRMT2A MIR1286
nsv828939 Chr.22:19696032 - 20324465 on Build GRCh38 Loss SEPT5-GP1BB MIR185 C22orf29 DGCR8 MIR3618 RANBP1 ZDHHC8 TBX1 MIR6816 MIR4761 CCDC188 COMT MIR1306 GP1BB LOC284865 GNB1L LOC440792 RTN4R LINC00896 SEPT5 ARVCF DGCR6L TXNRD2 TANGO2 TRMT2A MIR1286
nsv828938 Chr.22:19691069 - 20324465 on Build GRCh38 Gain SEPT5-GP1BB MIR185 C22orf29 DGCR8 MIR3618 RANBP1 ZDHHC8 TBX1 MIR6816 MIR4761 CCDC188 COMT MIR1306 GP1BB LOC284865 GNB1L LOC440792 RTN4R LINC00896 SEPT5 ARVCF DGCR6L TXNRD2 TANGO2 TRMT2A MIR1286
dgv4480n100 Chr.22:20069620 - 20262667 on Build GRCh38 Gain LINC00896 MIR1306 LOC284865 DGCR8 MIR3618 RANBP1 ZDHHC8 CCDC188 TRMT2A MIR6816 MIR1286 RTN4R
nsv471183 Chr.22:20018517 - 20319470 on Build GRCh38 Loss MIR1306 MIR185 LOC284865 DGCR8 MIR3618 RANBP1 ZDHHC8 MIR6816 LOC440792 RTN4R LINC00896 DGCR6L TANGO2 CCDC188 TRMT2A MIR1286
nsv953027 Chr.22:20085378 - 20303977 on Build GRCh38 Deletion MIR1306 LOC284865 DGCR8 MIR3618 RANBP1 ZDHHC8 MIR6816 LOC440792 RTN4R LINC00896 CCDC188 TRMT2A MIR1286
nsv834133 Chr.22:20029363 - 20176708 on Build GRCh38 Loss MIR1306 MIR185 DGCR8 MIR3618 RANBP1 TANGO2 ZDHHC8 CCDC188 TRMT2A MIR6816
dgv7983n54 Chr.22:19762002 - 20321870 on Build GRCh38 Gain MIR1306 MIR185 C22orf29 LOC284865 DGCR8 MIR3618 RANBP1 GNB1L ZDHHC8 TBX1 MIR6816 LOC440792 RTN4R LINC00896 ARVCF DGCR6L TXNRD2 MIR4761 TANGO2 CCDC188 COMT TRMT2A MIR1286

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

RNA methyltransferase

Gene Ontology Categories:

Function(s) Process(es)


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