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Gene Symbol:
ARID1A
Entrez Gene ID
8289
Gene Name:
AT-rich interaction domain 1A
Gene Aliases
B120, BAF250, BAF250a, BM029, C1orf4, CSS2, ELD, MRD14, OSA1, P270, SMARCF1, hELD, hOSA1
Gene Chromosome Location
Chr.1: on Build GRCh38
UniGene
Hs.468972
Species:
Human
Primer Chromosome Location
Chr.1: 26774599-26775103 on Build GRCh38
Amplicon Length
505
Primer Sequences
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Ampliseq ID's
Primer ID Hs00398047_CE
Primer 5'-tail Option
Purification
Primer Pair /FWD/REV
Synthesis Scale 25 nmol
Availability Made To Order
Catalog #'s A15629,A15630
Price (USD) USD 16.46,USD 16.46

Genomic Map

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Assay Details

Gene Information


ARID1A
Accession Protein COSMIC ID Mutation AA
RefSeq NM_006015.4 NP_006006.3 1742795 c.4823A>G p.H1608R
5346964 c.4549_4550insC p.Q1519fs*13
1341415 c.4421delA p.N1475fs*6
6919543 c.4839_4840GC>TT p.M1613_Q1614>I*
6604522 c.4777C>T p.R1593W
5596289 c.4852C>T p.P1618S
1602151 c.4681G>C p.V1561L
5347106 c.4432C>T p.P1478S
6927944 c.4669_4676delCCCTCTGC p.S1558fs*11
4941151 c.4424A>C p.N1475T
6126231 c.4499G>T p.G1500V
6963306 c.4669C>T p.P1557S
5760786 c.4564G>T p.A1522S
7345398 c.4796_4800delCCTCT p.S1600fs*1
6987178 c.4556A>C p.Q1519P
4765105 c.4550_4551insC p.Q1519fs*13
6917680 c.4751A>T p.Q1584L
1667290 c.4388G>A p.R1463H
3804820 c.4532G>A p.R1511K
6926633 c.4667G>T p.G1556V
6913129 c.4513A>G p.T1505A
6963940 c.4488_4489delCA p.M1497fs*5
7340243 c.4796C>T p.T1599I
3789828 c.4868C>T p.S1623L
6023931 c.4624G>A p.E1542K
6604518 c.4443delG p.G1482fs*23
4995437 c.4717C>T p.Q1573*
51475 c.4582C>T p.R1528*
4495906 c.4637C>T p.P1546L
3727925 c.4709C>G p.S1570C
7003170 c.4559delG p.G1520fs*7
140918 c.4439T>C p.M1480T
254550 c.4477C>T p.Q1493*
414505 c.4591G>T p.E1531*
6035011 c.4751A>G p.Q1584R
5347044 c.4792C>T p.R1598C
5825559 c.4758C>T p.S1586S
51484 c.4840C>T p.Q1614*
1639819 c.4550delC p.Q1519fs*8
6937199 c.4562C>T p.P1521L
2235520 c.4541delC p.T1514fs*13
7343489 c.4631C>T p.S1544L
4031017 c.4381C>T p.R1461*
51445 c.4709_4712delCTAA p.N1571fs*40
907729 c.4760_4772delGCCCTGCTCCCCT p.A1589fs*19
6975068 c.4463C>T p.S1488L
6271523 c.4576G>T p.V1526L
3724470 c.4555_4556insC p.Q1519fs*13
4878978 c.4652G>A p.R1551H
318770 c.4397C>T p.A1466V
6604521 c.4576G>A p.V1526M
6604554 c.4387C>T p.R1463C
6969181 c.4477_4487del11 p.Q1493fs*6
4990557 c.4802C>T p.P1601L
7339847 c.4646G>A p.G1549D
7342096 c.4723C>T p.P1575S
6023795 c.4742A>T p.H1581L
6604517 c.4502G>A p.R1501H
5347075 c.4839G>A p.M1613I
6960696 c.4657delC p.P1554fs*11
6945171 c.4613delG p.A1539fs*26
1687265 c.4372C>T p.Q1458*
7134020 c.4536G>C p.Q1512H
211769 c.4683_4684insC p.M1564fs*8
380737 c.4394C>G p.S1465C
4430158 c.4766C>T p.A1589V
231798 c.4781C>T p.P1594L
6604542 c.4490T>C p.M1497T
6930093 c.4698_4699insC p.P1569fs*3
1602150 c.4494G>A p.W1498*
1502574 c.4735C>T p.Q1579*
5347043 c.4742A>G p.H1581R
3400647 c.4380C>T p.G1460G
7117670 c.4532delG p.R1511fs*16
51483 c.4624G>T p.E1542*
2235519 c.4496_4497insG p.R1501fs*2
7325529 c.4721C>T p.P1574L
7403573 c.4714_4715insT p.Y1572fs*31
5516144 c.4560C>T p.G1520G
6969963 c.4742delA p.H1581fs*31
1725796 c.4807A>T p.K1603*
907728 c.4538_4548delGCACGGGCTCT p.T1514fs*14
7128082 c.4578G>A p.V1526V
4998739 c.4480_4481insAA p.G1495fs*11
51479 c.4851_4851delT p.P1619fs*7
5202318 c.4768delC p.L1591fs*21
7101919 c.4799C>T p.S1600F
6906939 c.4627_4636del10 p.G1543fs*19
51459 c.4640_4640delC p.H1548fs*17
6945400 c.4493G>A p.W1498*
6948473 c.4807_4820del14 p.K1603fs*40
3764177 c.4847C>T p.A1616V
7109456 c.4410_4411insA p.N1471fs*20
5369887 c.4544_4553del10 p.G1515fs*9
254547 c.4750C>T p.Q1584*
3724477 c.4403_4403delC p.P1468fs*13
4143739 c.4693A>C p.T1565P
5347143 c.4518T>G p.Y1506*
7253219 c.4509C>A p.D1503E
6917783 c.4552C>T p.P1518S
5430711 c.4583G>A p.R1528Q
133013 c.4743_4744delCA p.I1582fs*20
6972476 c.4555C>T p.Q1519*
6909833 c.4536G>T p.Q1512H
6926919 c.4848_4849insG p.P1618fs*30
7414318 c.4687C>A p.P1563T
6997622 c.4379G>A p.G1460D
1133049 c.4808_4848del41 p.K1603fs*31
6847951 c.4501C>T p.R1501C
3865206 c.4686C>T p.P1562P
6966095 c.4640C>T p.S1547F
6950101 c.4398_4399insC p.G1469fs*22
5053357 c.4634G>A p.W1545*
6210916 c.4774_4775insC p.R1593fs*10
5413342 c.4774C>T p.P1592S
5923491 c.4472T>C p.V1491A
6503525 c.4656G>T p.Q1552H
2235525 c.4791C>T p.N1597N
4170636 c.4834_4835delAA p.K1612fs*35
6907410 c.4665T>C p.Y1555Y
4031019 c.4632G>A p.S1544S
5825578 c.4757C>T p.S1586F
5938566 c.4769C>T p.P1590L
907727 c.4417C>T p.Q1473*
4663230 c.4833_4834insA p.M1613fs*35
6934295 c.4409_4413delCCAAT p.T1470fs*19
7175503 c.4807A>G p.K1603E
7347871 c.4524_4525insT p.A1509fs*23
3984937 c.4523A>G p.Y1508C
7177581 c.4813C>T p.P1605S
5967544 c.4468G>T p.E1490*
5601046 c.4853C>T p.P1618L
4765106 c.4761_4762insC p.A1589fs*14
6944733 c.4468G>A p.E1490K
133016 c.4524T>A p.Y1508*
6906548 c.4833G>C p.M1611I
7342094 c.4600C>T p.H1534Y
7169920 c.4599G>A p.L1533L
6980772 c.4382G>A p.R1461Q
6930904 c.4373_4377delAGTTT p.Q1458fs*31
7340244 c.4415C>T p.A1472V
6918697 c.4568A>G p.Y1523C
907730 c.4856C>T p.P1619L
4663229 c.4399delC p.P1468fs*13
6975116 c.4699delC p.P1568fs*44
3727926 c.4716C>G p.Y1572*
4995438 c.4724C>A p.P1575Q
6946748 c.4394_4395insT p.A1466fs*25
6953976 c.4609C>T p.Q1537*
5413341 c.4477C>A p.Q1493K
5346996 c.4811C>A p.S1604Y
7113825 c.4604_4608delCAGAT p.D1536fs*34
51485 c.4386_4387insA p.R1463fs*28
1639820 c.4852delC p.P1619fs*7
132998 c.4689_4689delC p.M1564fs*1
6928285 c.4639_4667del29 p.H1548fs*14
2235522 c.4684delC p.M1564fs*1
5825560 c.4813C>G p.P1605A
4031018 c.4534C>T p.Q1512*
6349176 c.4657C>T p.P1553S
6920617 c.4606G>C p.D1536H
51223 c.4635G>A p.W1545*
4577169 c.4606G>A p.D1536N
4775802 c.4801C>T p.P1601S
NM_139135.2 NP_624361.1 - - -
GenBank AB001895.1 BAA23269.1 - - -
AB210022.1 BAE06104.1 - - -
AF219114.1 AAG17549.2 - - -
AF231056.1 AAG33967.1 - - -
AF265208.1 AAF75765.1 - - -
AF268913.1 AAK54505.1 - - -
AF521670.1 AAN03446.1 - - -
AK027655.1 BAB55270.1 - - -
AK074940.1 BAC11306.1 - - -
AK223275.1 BAD96995.1 - - -
AK308363.1 - - -
ENST00000324856.0 - - -


Phenotype

MIM: 603024

Literature Links:

ARID1A PubMed Links

SNP ID

rs370907880 rs764212710 rs772532872 rs960568198 rs765512812 rs910581978 rs775699799 rs376018873 rs762663996 rs747997193 rs765193345 rs750565364 rs756115672 rs769381588 rs113718290 rs751377877 rs748573855 rs562707776 rs199776442 rs774772700 rs943479149 rs768630495 rs778655919 rs560211386 rs774665228 rs112918204 rs761906554 rs750144473 rs889246106 rs772281669 rs747709589 rs752354591 rs752731961 rs752544377 rs764783001 rs777068095 rs778260889 rs558739370 rs773152675 rs1001937313 rs757461100 rs1011799982 rs753094331 rs754834146 rs201556442 rs761144372 rs754673704 rs140978841 rs1040465888 rs764148027 rs904849644 rs768023738 rs745476438 rs146171057 rs755914291 rs776101789 rs191618031 rs377673073 rs138023869 rs923351807 rs764124825 rs574277680 rs200313047 rs141670393 rs548881096 rs779806180 rs928335040 rs369995274 rs763065019 rs999125494 rs760575192 rs773815689 rs747585997 rs781689378 rs779619447 rs780921670 rs746264786 rs867674743 rs771481044 rs149095176 rs773031590 rs763565851 rs756671794 rs375431469 rs768080595 rs748819428 rs759751306 rs201288345 rs773525655 rs758069825 rs902043391

Submission count

3

Allele Nomenclature



Chromosome Location

Chr.1: 26774995-26774995 on Build GRCh38

Allele Frequency



1000Genome Applied Biosystems® HapMap
Global - Not Available Caucasian - Not Available CEPH (CEU) - Not Available
EAS - Not Available African American - Not Available YRI (Yoruba) - Not Available
SAS - Not Available Chinese - Not Available CHB (Han Chinese) - Not Available
AFR - Not Available Japanese - Not Available JPT (Japanese) - Not Available
EUR - Not Available
AMR - Not Available


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