Powerful, multifaceted 2D–5D software for visualization, processing and analysis of microscopy imaging serving drug discovery

Supporting scientists and imaging experts on the challenging path toward drug discovery need state-of-the-art, repeatable, and automated 2D/3D software solutions. Thermo Scientific Amira Software reduces manual steps in the drug discovery process while increasing accuracy, time, and cost-effectiveness. From target discovery to compound identification, Amira Software is a powerful, multi-faceted 2D-5D platform for visualizing, manipulating, and understanding life science research data from many image modalities, including CT (Computed Tomography), MRI (Magnetic Resonance Imaging), 3D microscopy, and other techniques. It offers a comprehensive toolbox of image processing methods that can be automated through custom detection workflows.

Life science researchers continue to drive drug discovery and academic research down to a structural, sub-cellular level using automated, all-in-one tools and technologies. In pushing these limits, scientists can better understand how cells function and respond to disease or genetic variations, using their findings to advance research and development for breakthrough drug discoveries.

Imaging data

Amira Software workflow

Processing

Amira Software workflow

Visualization

Amira Software workflow

Analysis

Amira Software workflow

imaging data analysis toolbox

Empower your lab with powerful and comprehensive imaging data analysis toolbox

Amira Software offers high-end processing, registration, segmentation, visualization, animation, and data analysis to support your advanced discovery workflows in pharmaceutical research areas ranging from structural and cellular biology to tissue imaging, neuroscience, preclinical imaging, and bioengineering.

Accelerate time to data and time to market

Accelerate time to data and time to market

By providing ready-to-use recipes and AI-powered automated processing tools, Amira Software supports faster image analysis reducing the number of manual steps. The software has built-in support for deep learning models and includes a ready-to-use Python environment. By creating automated workflows, Amira Software supports scientists with faster image analysis and reproducibility, reducing the learning curve for inexperienced users. Deep learning models accelerate and improve the segmentation and interpretation of complex or large data sets.

Analyze and correlate data

Analyze and correlate data from any imaging modality, at any scale

Amira Software offers native compatibility and expansive correlative analysis to help you better understand your 2D-5D imaging data. It is a flexible software solution that can handle any modality at any scale and size. With a multi-volume infrastructure, Amira Software is designed to perform image registration on as many modalities as desired. It can also perform correlative analysis at either single points in time or as part of longitudinal studies.

Customization

Confidence

Thanks to powerful segmentation and image processing capabilities and workflows, and after 20+ years of collaboration with the scientific community and thousands of researchers, it has been now proven that our digital imaging-based workflows provide reliable answers to biomedical and life science research.

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Support

Thanks to our dedicated professional support team, you get access to our top experts to ensure that no question is left unanswered. And with our training, consulting options, and ever-expanding collection of tutorials and how-to’s, you can reduce your learning curve and focus on getting the answers you are pursuing.

Customization

Customization

Because your needs are unique and keep evolving, our software solutions are fully flexible and open to customization. Thanks to our scripting interface (Python, TCL), bridge with MATLAB, and our programming API, you can expand our software solution and integrate your own IP (Intellectual Property). And, if needed, our professional service team can help you design unique solutions tailored to your needs.


Applications

 

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Techniques

Services

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Introductory training

Shorten your learning curve and maximize your investment with this introductory training specifically designed for new users of Amira, Avizo and PerGeos Software.

The course consists of a lecture with hands-on sessions. The training material highlights the basic features and functionalities of Amira, Avizo and PerGeos Software.

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Advanced training

Maximize your investment and reduce your time-to-results with this advanced training specifically designed for existing users of Amira, Avizo and PerGeos Software.

The course consists of a lecture with hands-on sessions. The training material highlights advanced features and functionalities of Amira, Avizo and PerGeos Software.

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Custom development

With over 25 years of experience in 3D and image processing and hundreds of custom projects delivered to organizations small and large, Thermo Fisher Scientific can provide you with a solution tailored to fit your specific needs.

We can customize and expand our software solutions at various levels.


Testimonials

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    VetCore, University of Veterinary Medicine uses Amira Software

    "Research at Vetmeduni Vienna is quite diverse, covering both clinical and preclinical research areas. We are currently four people working in the imaging facility, providing equipment and supports for researchers in both image acquisition (widefield microscopy, CLSM, spinning disk confocal microscopy, soon also STORM super-resolution microscopy, microscopic X-ray computed tomography) and in data visualization and analysis. Amira Software allows you to build networks, enabling complex interactions between data objects. Biology is also complex, and biological interactions are complex networks. Complex questions require complex tools to address them. In this respect, analysis networks such as used in Amira Software outperform most other software approaches when it comes to complex data analysis. Furthermore, I like that Amira Software is quite open concerning integration of deep learning networks and scripting (Tcl, Matlab, Python,...)."

    Stephan Handschuch, PhD
    VetCore, University of Veterinary Medicine, Vienna

     

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      EMBL and DKFZ uses Amira Software

      The present testimonial highlights the way Amira Software supported Matthia A. Karreman, MSc, PhD at EMBL and DKFZ, Heidelberg, Germany, in her project on multimodal correlative microscopy to efficiently target single tumor cells in vivo. Read reference paper.
      Video: 6 min


      Features


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      Products

      Thermo Scientific Amira 2D-5D visualization Software

      Amira Software
      Life Sciences

      • Explore 2D-5D bioimaging data
      • Identify and understand structures
      • Obtain statistical information
      • Share reports and stunning animations
      Thermo Scientific Krios G4 Cryo transmission electron microscope (TEM)

      Krios 5 Cryo-TEM

      • Fast, high-quality data collection
      • High workflow efficiency
      • Increased productivity and automation
      • Designed-in sustainability
      Thermo Scientific Aquilos 2 cryo focused ion beam (FIB)

      Aquilos 2 Cryo-FIB

      • Automation enables production of multiple lamellas
      • Target and extract your structure of interest with lift-out nano-manipulator
      • 3D visualization for high-resolution tomography
      Thermo Scientific Apreo 2 scanning electron microscope (SEM)

      Apreo 2 SEM

      • High-performance SEM for all-round nanometer or sub-nanometer resolution
      • In-column T1 backscatter detector for sensitive, TV-rate materials contrast
      • Excellent performance at long working distance (10 mm)

      Contact us

      For Research Use Only. Not for use in diagnostic procedures.

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