Annexin V staining is a common method used for identifying and analyzing apoptotic cells, providing valuable insights into the underlaying mechanisms of programmed cell death. Thermo Fisher Scientific offers high-quality annexin V fluorescent conjugates, available as stand-alone reagents or in convenient kits for flow cytometry or imaging suspension cells. Our Annexin V products are conjugated to Alexa Fluor and eFluor dyes, helping ensure brighter signals and compatibility with a wide range of laser lines.

What is annexin V staining?

The human vascular anticoagulant annexin V is a 35–36 kDa, Ca2+-dependent phospholipid-binding protein that has a high affinity for the anionic phospholipid phosphatidylserine (PS). In normal healthy cells, PS is located on the cytoplasmic surface of the plasma membrane. However, during apoptosis, the plasma membrane undergoes structural changes that include translocation of PS from the inner to the outer leaflet (extracellular side) of the plasma membrane.

It has been reported that the translocated phosphatidylserine on the outer surface of the cell marks the cell for recognition and phagocytosis by macrophages (1). Fluorescent conjugates of annexin V are commonly used to identify apoptotic cells by binding to PS (Figure 1).

Annexin V conjugates for apoptosis detection

Annexin V conjugates provide quick and reliable detection methods for studying the externalization of phosphatidylserine, during apoptosis. The difference in fluorescence intensity between apoptotic and nonapoptotic cells stained with our fluorescent annexin V conjugates, as measured by flow cytometry, is typically about 100-fold.

Experimental conditions for annexin V staining

Annexin V staining to detect apoptotic cells can only be done on live cells and tissue. If samples are to be fixed post-staining, there are specific conditions required to achieve transient retention of signal. These include use of an alcohol-free, aldehyde-based fixation method, use of buffers containing Ca2+ and avoidance of surfactants/detergents. For your convenience, we also offer a concentrated annexin-binding buffer that facilitates the binding of annexin V to phosphatidylserine in apoptosis assays.

Avoiding false positives

It should be noted that there is a risk of false positives when staining with annexin V conjugates. Compromised plasma membranes of dead cells provide a path for annexin V protein to pass through to the interior of the cell where it can bind PS in the inner leaflet. We recommend using a live cell-impermeant stain in combination with annexin V conjugates. This combination allows for the separation of apoptotic cells from dead cells. While cells positive for both probes may indicate late stage apoptosis, annexin V staining in this population may be due to inner leaflet PS binding and therefore may not be reliably deemed apoptotic. In this combination, cells that are only annexin V-positive and therefore have intact plasma membranes, are demonstrably apoptotic. We offer a range of kits that include an annexin V conjugate and a compatible live cell-impermeant stain. These kits have been optimized for flow cytometry.

The selection guide below gives an overview of the stand-alone annexin V conjugates available as well as the required binding buffer.

  MicroscopyFlow cytometry
Annexin V conjugateEx/Em (nm)Common emission filtersLaserCommon emission filters
Alexa Fluor 350346/442DAPIUV450/40 nm
Pacific Blue410/455NA405/7 nm450/50 nm
Alexa Fluor 488490/525FITC488 nm530/30 nm
FITC490/525FITC488 nm530/30 nm
PE565/578TRITC488 nm
532 nm
561 nm
585/42 nm
Alexa Fluor 555555/580TRITC532 nm
561 nm
575/26 nm
Alexa Fluor 568578/603Texas Red532 nm
561 nm
610/20 nm
Alexa Fluor 594590/617Texas Red532 nm630/20 nm
Alexa Fluor 647650/665Cy5633-637 nm661/8 nm
APC650/660Cy5633-637 nm661/8 nm
Alexa Fluor 680679/702Cy5.5633-637 nm720/30 nm
Biotin-XNANANANA

See all Annexin V conjugates

Required buffer
Annexin Binding Buffer (5x)Facilitates the binding of annexin V to phosphatidylserine for apoptosis assays in flow cytometry

Alexa Fluor 488 Annexin V staining in flow cytometry experiment

Annexin V stains can be used to evaluate potential apoptosis-inducing drug treatments in live cell. Live cells treated with apoptosis-inducing drugs (i.e. camptothecin) will demonstrate an increase in apoptotic cells (Figure 2, bottom right). 

Figure 2. Jurkat cells (T cell leukemia, human) treated with 10 μM camptothecin for 4 hours (right panel) or untreated (as control, left panel). Cells were then treated with Annexin V, Alexa Fluor 488 conjugate to identify apoptotic cells and with propidium iodide to identify dead cells, followed by flow cytometric analysis. Note that the camptothecin-treated cells (right panel) have a higher percentage of apoptotic cells (indicated by an “A”) than the basal level of apoptosis seen in the control cells (left panel). V = viable cells, D = dead cells.

The selection guide below gives an overview of the assay kits that contain annexin V conjugates. Learn more about Annexin V assay kits below.

ProductAnnexin V conjugate (ex/em maxima)Dead cell stain (ex/em maxima)Additional reagents in kitSize

Dead Cell Apoptosis Kits

Annexin V, Alexa Fluor 488
(499/521 nm)
PI
(535/617 nm)

Annexin binding buffer (5x)

250 assays
50 assays
Annexin V, Fluorescein (494/518 nm)PI
(535/617 nm)
50 assays
Annexin V, APC
(650/660 nm)
SYTOX Green
(503/524 nm)
50 assays
Annexin V, RPE
(488/575 nm)
SYTOX Green
(503/524 nm)
50 assays
Annexin V Apoptosis Detection KitsAnnexin V, APC
(650/660)
PI
(535/617)

Annexin binding buffer (10x)

200 assays
50 assays
Annexin V, FITC
(488/520)
PI
(535/617)
200 assays
50 assays
Annexin V, PE7-ADD
(546/647 nm)
200 assays
50 assays
Annexin V, eFluor 450 (405/450 nm)7-AAD
(546/647 nm)
200 assays
50 assays
Annexin V, RPE-Cyanine7 (488/767 nm)200 assays
50 assays
Annexin V, PerCP-eFluor 710 (482/710 nm)200 assays
50 assays
Pacific Blue Annexin V/SYTOX AADvanced Apoptosis KitAnnexin V, Pacific Blue
(415/455 nm)
SYTOX AADvanced (546/647 nm)Annexin binding buffer (5x)50 assays
Metabolic Activity Dead Cell Apoptosis KitAnnexin V, APC
(650/660 nm)
SYTOX Green
(503/524 nm
• Annexin binding buffer (5x)
• C12-resazurin (571/585 nm)
50 assays
Mitochondrial Membrane Potential Apoptosis KitAnnexin V, Alexa Fluor 488 (499/521 nm)none• MitoTracker Red (CMXRos)
• Annexin binding buffer (5x)
• DMSO
50 assays
Single-channel Dead Cell Apoptosis KitAnnexin V, Alexa Fluor 488 (499/521 nm)SYTOX Green
(503/524 nm)
Annexin binding buffer (5x)50 assays


Annexin V Apoptosis Detection Kits

During early stages of apoptosis, PS located on the exterior of cells will stain with Annexin V. The intact plasma membrane prevents other dyes such as propidium iodide (PI), 7-AAD, or fixable viability dyes from entering the cell. During late stages of apoptosis, the cell membrane loses integrity and allows annexin V to stain interior PS. The use of additional viability dyes can differentiate between late-stage apoptotic cells and necrotic cells (Figure 3, 4). 

Scatter plot showing early and late-stage apoptotic cells 

Figure 3. Annexin V staining with 7-AAD viability dye. Mouse thymocytes were prepared as a single cell suspension and incubated overnight at 37°C in medium. Cells were harvested and stained with Annexin V eFluor™ 450 and 7-AAD Viability Staining Solution. Early-stage apoptotic cells are seen in the upper left (annexin V positive, viability dye negative). Late-stage apoptotic and necrotic cells are seen in the upper right (annexin V positive, viability dye positive).

Scatter plot showing early and late-stage apoptotic cells

Figure 4. Annexin V staining with fixability viability dye eFluor 780. Mouse thymocytes were prepared as a single cell suspension and incubated overnight at 37°C in medium to induce apoptosis. Cells were harvested and stained using the Annexin V Apoptosis Detection Set PE-Cyanine7 and Fixable Viability Dye eFluor™ 780. Early-stage apoptotic cells are seen in the upper left (annexin V positive, viability dye negative). Late-stage apoptotic and necrotic cells are seen in the upper right (annexin V positive, viability dye positive).


Annexin V/SYTOX AADvanced Apoptosis Kit

Externalized phosphatidylserine in apoptotic cells is detected using recombinant annexin V conjugated to Pacific Blue (violet-fluorescence) while dead cells are detected using SYTOX AADvanced. Populations can be distinguished by using a flow cytometer with a 405 nm and 488 nm laser lines. A dual parameter plot will show apoptotic cells as violet fluorescence, dead/necrotic cells will be shown as dual red and violet fluorescence, and live cells will be show little to no fluorescence (Figure 5).

Figure 5. Jurkat cells (T-cell leukemia, human) treated with 10 µM camptothecin for four hours. Cells were treated with the reagents in Pacific Blue Annexin/SYTOX AADvanced Apoptosis Kit and analyzed by flow cytometry using 405 nm and 488 nm excitation. Note that the camptothecin-treated cells have a higher percentage of apoptotic cells (1B) than the basal level of apoptosis seen in the control cells (1A). A = apoptotic cells, V = viable cells, N = necrotic cells.


Metabolic Activity Dead Cell Apoptosis Kit

Annexin V assays are available to distinguish live (C12 resazurin - Dodecylresorufin), apoptotic (Annexin V), and late apoptotic (SYTOX Green nucleic acid stain) cells (Figure 6). Nonfluorescent C12-resazurin is reduced to C12-resorufin by live cells and is proportional to the number of cells present. Populations can be distinguished by using a flow cytometer with 488 nm and 633 nm laser lines.

3 dot plots of live, dead and apoptotic cells stained with the Metabolic Activity/Annexin V/Dead Cell Apoptosis Kit.

Figure 6. Flow cytometric analysis of Jurkat cells using the Metabolic Activity/Annexin V/Dead Cell Apoptosis Kit. Jurkat human T-cell leukemia cells were first exposed to either 10 µM camptothecin or 2 mM hydrogen peroxide for 4 hours at 37°C, 5% CO2. The cells were then combined, treated with the reagents in the kit and analyzed by flow cytometry. (A) The SYTOX Green fluorescence versus allophycocyanin (APC) annexin fluorescence dot plot shows resolution of live, apoptotic and dead cell populations. The cell populations can be evaluated for metabolic activity using (B) the dodecylresorufin fluorescence versus SYTOX Green fluorescence dot plot and (C) the dodecylresorufin fluorescence versus allophycocyanin fluorescence dot plot.

Alternatives to annexin V staining

There are some situations where the optimal method for the detection of apoptosis is not annexin V staining. These include assays where cells are sensitive to the high calcium concentrations required for annexin V binding, or assays where phosphatidylserine detection on adherent cells is adversely affected by trypsinization, and assays where washing of samples is prohibitive. We provide unique flow cytometry assays to measure membrane changes under conditions where annexin V binding is problematic.

Learn about additional apoptosis assays for imaging, microplates, or high-content analysis

When the use of calcium containing buffers isn’t an option

  • No special buffers or wash steps required
  • Simple, 5-minute staining protocol for flow cytometry
  • Compatible with other blue-excited apoptotic stains
  • Accurate apoptotic analysis on trypsinized cells

The Violet Ratiometric Membrane Asymmetry Probe⁄Dead Cell Apoptosis Kit provides an easy, efficient method for the detection of apoptosis with dead cell discrimination using a violet laser flow cytometer. Unlike annexin-based assays, this assay does not require special buffers or wash steps, and it is less susceptible to the cell membrane damage commonly found during the physical or chemical removal steps when assaying adherent cells, therefore providing better data quality. The Violet Ratiometric Membrane Asymmetry Probe (F2N123S) works well on adherent and suspension cells and correlates with other indicators of apoptosis, such as caspase detection and changes in mitochondrial membrane potential.

ProductLaserEx/EmApoptotic cell stainDead cell stainCat. No.
Violet Ratiometric Membrane Asymmetry Probe/Dead Cell Apoptosis Kit405 and 488 nm405/585 (live),
405/530 (apoptotic),
546/647 (dead)
F2N12SSYTOX AADvancedA35137
Membrane Permeability/Dead Cell Apoptosis Kit405 and 488 nm434/456 nm (apoptotic)
546/647 nm (dead)
PO-PRO-17-AADV35123

The dye exhibits an excited-state intramolecular proton transfer (ESIPT) reaction resulting in a dual fluorescence with two emission bands corresponding to 530 nm and 585 nm, producing a two-color ratiometric response to variations in surface charge. The F2N12S probe is combined with SYTOX AADvanced dead cell stain, which is capable of passing through the cell membrane only in late apoptotic or necrotic cells allowing discrimination form early apoptotic cells (Figure 7). The Violet Ratiometric Membrane Asymmetry Probe⁄Dead Cell Apoptosis Kit can also be paired with MitoProbe DilC1(5) for analysis of apoptosis and viability (Figure 8).

Violet Ratiometric Membrane Asymmetry Probe for apoptosis detection

Figure 7. Violet Ratiometric Membrane Asymmetry Probe for apoptosis detection. Jurkat cells (T-cell leukemia, human) were treated with 10 μM camptothecin for four hours (panels B and D) or left untreated as a control (panels A and C). Samples were analyzed on a flow cytometer with 405 nm excitation using 585 nm and 530 nm bandpass filters for F2N12S, and 488 nm excitation for SYTOX AADvanced dead cell stain using a 695 nm bandpass filter. Living cells can be discriminated from apoptotic and dead cells by the relative intensities of the two emission bands from F2N12S (A and B). In panels C and D, SYTOX AADvanced dead cell stain fluorescence is plotted against a derived ratio parameter from the two emission bands (585/530 nm) of F2N12S. A = apoptotic cells, L = live cells, D = dead cells.

Scatter plot using Violet Ratiometric Membrane Asymmetry Probe and Dead Cell Apoptosis kit showing membrane potential loss using MitoProbe DilC1(5)

Figure 8. Violet Ratiometric Membrane Asymmetry Probe/Dead Cell Apoptosis Kit for apoptosis detection. Control (top row) and 4-hour camptothecin-treated (bottom row) Jurkat cells were stained with 1 µM SYTOX® AADvanced™ Dead Cell Stain, 200 nM F2N12S, and 50 nM MitoProbe™ DiIC1(5). Dead cells were first excluded (histograms) by gating live cells (those that have lower SYTOX® AADvanced™ fluorescence, indicated by bars). Bivariant density plots show a two-parameter apoptosis assay for mitochondrial membrane potential loss (decreased DiIC1(5) fluorescence) and breakdown of membrane asymmetry (smaller F2N12S 585/530 nm fluorescence ratio). The A, L, and D labels on the graphs indicate apoptotic, live, and dead cells, respectively.

What is annexin V staining?

The human vascular anticoagulant annexin V is a 35–36 kDa, Ca2+-dependent phospholipid-binding protein that has a high affinity for the anionic phospholipid phosphatidylserine (PS). In normal healthy cells, PS is located on the cytoplasmic surface of the plasma membrane. However, during apoptosis, the plasma membrane undergoes structural changes that include translocation of PS from the inner to the outer leaflet (extracellular side) of the plasma membrane.

It has been reported that the translocated phosphatidylserine on the outer surface of the cell marks the cell for recognition and phagocytosis by macrophages (1). Fluorescent conjugates of annexin V are commonly used to identify apoptotic cells by binding to PS (Figure 1).

Annexin V conjugates for apoptosis detection

Annexin V conjugates provide quick and reliable detection methods for studying the externalization of phosphatidylserine, during apoptosis. The difference in fluorescence intensity between apoptotic and nonapoptotic cells stained with our fluorescent annexin V conjugates, as measured by flow cytometry, is typically about 100-fold.

Experimental conditions for annexin V staining

Annexin V staining to detect apoptotic cells can only be done on live cells and tissue. If samples are to be fixed post-staining, there are specific conditions required to achieve transient retention of signal. These include use of an alcohol-free, aldehyde-based fixation method, use of buffers containing Ca2+ and avoidance of surfactants/detergents. For your convenience, we also offer a concentrated annexin-binding buffer that facilitates the binding of annexin V to phosphatidylserine in apoptosis assays.

Avoiding false positives

It should be noted that there is a risk of false positives when staining with annexin V conjugates. Compromised plasma membranes of dead cells provide a path for annexin V protein to pass through to the interior of the cell where it can bind PS in the inner leaflet. We recommend using a live cell-impermeant stain in combination with annexin V conjugates. This combination allows for the separation of apoptotic cells from dead cells. While cells positive for both probes may indicate late stage apoptosis, annexin V staining in this population may be due to inner leaflet PS binding and therefore may not be reliably deemed apoptotic. In this combination, cells that are only annexin V-positive and therefore have intact plasma membranes, are demonstrably apoptotic. We offer a range of kits that include an annexin V conjugate and a compatible live cell-impermeant stain. These kits have been optimized for flow cytometry.

The selection guide below gives an overview of the stand-alone annexin V conjugates available as well as the required binding buffer.

  MicroscopyFlow cytometry
Annexin V conjugateEx/Em (nm)Common emission filtersLaserCommon emission filters
Alexa Fluor 350346/442DAPIUV450/40 nm
Pacific Blue410/455NA405/7 nm450/50 nm
Alexa Fluor 488490/525FITC488 nm530/30 nm
FITC490/525FITC488 nm530/30 nm
PE565/578TRITC488 nm
532 nm
561 nm
585/42 nm
Alexa Fluor 555555/580TRITC532 nm
561 nm
575/26 nm
Alexa Fluor 568578/603Texas Red532 nm
561 nm
610/20 nm
Alexa Fluor 594590/617Texas Red532 nm630/20 nm
Alexa Fluor 647650/665Cy5633-637 nm661/8 nm
APC650/660Cy5633-637 nm661/8 nm
Alexa Fluor 680679/702Cy5.5633-637 nm720/30 nm
Biotin-XNANANANA

See all Annexin V conjugates

Required buffer
Annexin Binding Buffer (5x)Facilitates the binding of annexin V to phosphatidylserine for apoptosis assays in flow cytometry

Alexa Fluor 488 Annexin V staining in flow cytometry experiment

Annexin V stains can be used to evaluate potential apoptosis-inducing drug treatments in live cell. Live cells treated with apoptosis-inducing drugs (i.e. camptothecin) will demonstrate an increase in apoptotic cells (Figure 2, bottom right). 

Figure 2. Jurkat cells (T cell leukemia, human) treated with 10 μM camptothecin for 4 hours (right panel) or untreated (as control, left panel). Cells were then treated with Annexin V, Alexa Fluor 488 conjugate to identify apoptotic cells and with propidium iodide to identify dead cells, followed by flow cytometric analysis. Note that the camptothecin-treated cells (right panel) have a higher percentage of apoptotic cells (indicated by an “A”) than the basal level of apoptosis seen in the control cells (left panel). V = viable cells, D = dead cells.

The selection guide below gives an overview of the assay kits that contain annexin V conjugates. Learn more about Annexin V assay kits below.

ProductAnnexin V conjugate (ex/em maxima)Dead cell stain (ex/em maxima)Additional reagents in kitSize

Dead Cell Apoptosis Kits

Annexin V, Alexa Fluor 488
(499/521 nm)
PI
(535/617 nm)

Annexin binding buffer (5x)

250 assays
50 assays
Annexin V, Fluorescein (494/518 nm)PI
(535/617 nm)
50 assays
Annexin V, APC
(650/660 nm)
SYTOX Green
(503/524 nm)
50 assays
Annexin V, RPE
(488/575 nm)
SYTOX Green
(503/524 nm)
50 assays
Annexin V Apoptosis Detection KitsAnnexin V, APC
(650/660)
PI
(535/617)

Annexin binding buffer (10x)

200 assays
50 assays
Annexin V, FITC
(488/520)
PI
(535/617)
200 assays
50 assays
Annexin V, PE7-ADD
(546/647 nm)
200 assays
50 assays
Annexin V, eFluor 450 (405/450 nm)7-AAD
(546/647 nm)
200 assays
50 assays
Annexin V, RPE-Cyanine7 (488/767 nm)200 assays
50 assays
Annexin V, PerCP-eFluor 710 (482/710 nm)200 assays
50 assays
Pacific Blue Annexin V/SYTOX AADvanced Apoptosis KitAnnexin V, Pacific Blue
(415/455 nm)
SYTOX AADvanced (546/647 nm)Annexin binding buffer (5x)50 assays
Metabolic Activity Dead Cell Apoptosis KitAnnexin V, APC
(650/660 nm)
SYTOX Green
(503/524 nm
• Annexin binding buffer (5x)
• C12-resazurin (571/585 nm)
50 assays
Mitochondrial Membrane Potential Apoptosis KitAnnexin V, Alexa Fluor 488 (499/521 nm)none• MitoTracker Red (CMXRos)
• Annexin binding buffer (5x)
• DMSO
50 assays
Single-channel Dead Cell Apoptosis KitAnnexin V, Alexa Fluor 488 (499/521 nm)SYTOX Green
(503/524 nm)
Annexin binding buffer (5x)50 assays


Annexin V Apoptosis Detection Kits

During early stages of apoptosis, PS located on the exterior of cells will stain with Annexin V. The intact plasma membrane prevents other dyes such as propidium iodide (PI), 7-AAD, or fixable viability dyes from entering the cell. During late stages of apoptosis, the cell membrane loses integrity and allows annexin V to stain interior PS. The use of additional viability dyes can differentiate between late-stage apoptotic cells and necrotic cells (Figure 3, 4). 

Scatter plot showing early and late-stage apoptotic cells 

Figure 3. Annexin V staining with 7-AAD viability dye. Mouse thymocytes were prepared as a single cell suspension and incubated overnight at 37°C in medium. Cells were harvested and stained with Annexin V eFluor™ 450 and 7-AAD Viability Staining Solution. Early-stage apoptotic cells are seen in the upper left (annexin V positive, viability dye negative). Late-stage apoptotic and necrotic cells are seen in the upper right (annexin V positive, viability dye positive).

Scatter plot showing early and late-stage apoptotic cells

Figure 4. Annexin V staining with fixability viability dye eFluor 780. Mouse thymocytes were prepared as a single cell suspension and incubated overnight at 37°C in medium to induce apoptosis. Cells were harvested and stained using the Annexin V Apoptosis Detection Set PE-Cyanine7 and Fixable Viability Dye eFluor™ 780. Early-stage apoptotic cells are seen in the upper left (annexin V positive, viability dye negative). Late-stage apoptotic and necrotic cells are seen in the upper right (annexin V positive, viability dye positive).


Annexin V/SYTOX AADvanced Apoptosis Kit

Externalized phosphatidylserine in apoptotic cells is detected using recombinant annexin V conjugated to Pacific Blue (violet-fluorescence) while dead cells are detected using SYTOX AADvanced. Populations can be distinguished by using a flow cytometer with a 405 nm and 488 nm laser lines. A dual parameter plot will show apoptotic cells as violet fluorescence, dead/necrotic cells will be shown as dual red and violet fluorescence, and live cells will be show little to no fluorescence (Figure 5).

Figure 5. Jurkat cells (T-cell leukemia, human) treated with 10 µM camptothecin for four hours. Cells were treated with the reagents in Pacific Blue Annexin/SYTOX AADvanced Apoptosis Kit and analyzed by flow cytometry using 405 nm and 488 nm excitation. Note that the camptothecin-treated cells have a higher percentage of apoptotic cells (1B) than the basal level of apoptosis seen in the control cells (1A). A = apoptotic cells, V = viable cells, N = necrotic cells.


Metabolic Activity Dead Cell Apoptosis Kit

Annexin V assays are available to distinguish live (C12 resazurin - Dodecylresorufin), apoptotic (Annexin V), and late apoptotic (SYTOX Green nucleic acid stain) cells (Figure 6). Nonfluorescent C12-resazurin is reduced to C12-resorufin by live cells and is proportional to the number of cells present. Populations can be distinguished by using a flow cytometer with 488 nm and 633 nm laser lines.

3 dot plots of live, dead and apoptotic cells stained with the Metabolic Activity/Annexin V/Dead Cell Apoptosis Kit.

Figure 6. Flow cytometric analysis of Jurkat cells using the Metabolic Activity/Annexin V/Dead Cell Apoptosis Kit. Jurkat human T-cell leukemia cells were first exposed to either 10 µM camptothecin or 2 mM hydrogen peroxide for 4 hours at 37°C, 5% CO2. The cells were then combined, treated with the reagents in the kit and analyzed by flow cytometry. (A) The SYTOX Green fluorescence versus allophycocyanin (APC) annexin fluorescence dot plot shows resolution of live, apoptotic and dead cell populations. The cell populations can be evaluated for metabolic activity using (B) the dodecylresorufin fluorescence versus SYTOX Green fluorescence dot plot and (C) the dodecylresorufin fluorescence versus allophycocyanin fluorescence dot plot.

Alternatives to annexin V staining

There are some situations where the optimal method for the detection of apoptosis is not annexin V staining. These include assays where cells are sensitive to the high calcium concentrations required for annexin V binding, or assays where phosphatidylserine detection on adherent cells is adversely affected by trypsinization, and assays where washing of samples is prohibitive. We provide unique flow cytometry assays to measure membrane changes under conditions where annexin V binding is problematic.

Learn about additional apoptosis assays for imaging, microplates, or high-content analysis

When the use of calcium containing buffers isn’t an option

  • No special buffers or wash steps required
  • Simple, 5-minute staining protocol for flow cytometry
  • Compatible with other blue-excited apoptotic stains
  • Accurate apoptotic analysis on trypsinized cells

The Violet Ratiometric Membrane Asymmetry Probe⁄Dead Cell Apoptosis Kit provides an easy, efficient method for the detection of apoptosis with dead cell discrimination using a violet laser flow cytometer. Unlike annexin-based assays, this assay does not require special buffers or wash steps, and it is less susceptible to the cell membrane damage commonly found during the physical or chemical removal steps when assaying adherent cells, therefore providing better data quality. The Violet Ratiometric Membrane Asymmetry Probe (F2N123S) works well on adherent and suspension cells and correlates with other indicators of apoptosis, such as caspase detection and changes in mitochondrial membrane potential.

ProductLaserEx/EmApoptotic cell stainDead cell stainCat. No.
Violet Ratiometric Membrane Asymmetry Probe/Dead Cell Apoptosis Kit405 and 488 nm405/585 (live),
405/530 (apoptotic),
546/647 (dead)
F2N12SSYTOX AADvancedA35137
Membrane Permeability/Dead Cell Apoptosis Kit405 and 488 nm434/456 nm (apoptotic)
546/647 nm (dead)
PO-PRO-17-AADV35123

The dye exhibits an excited-state intramolecular proton transfer (ESIPT) reaction resulting in a dual fluorescence with two emission bands corresponding to 530 nm and 585 nm, producing a two-color ratiometric response to variations in surface charge. The F2N12S probe is combined with SYTOX AADvanced dead cell stain, which is capable of passing through the cell membrane only in late apoptotic or necrotic cells allowing discrimination form early apoptotic cells (Figure 7). The Violet Ratiometric Membrane Asymmetry Probe⁄Dead Cell Apoptosis Kit can also be paired with MitoProbe DilC1(5) for analysis of apoptosis and viability (Figure 8).

Violet Ratiometric Membrane Asymmetry Probe for apoptosis detection

Figure 7. Violet Ratiometric Membrane Asymmetry Probe for apoptosis detection. Jurkat cells (T-cell leukemia, human) were treated with 10 μM camptothecin for four hours (panels B and D) or left untreated as a control (panels A and C). Samples were analyzed on a flow cytometer with 405 nm excitation using 585 nm and 530 nm bandpass filters for F2N12S, and 488 nm excitation for SYTOX AADvanced dead cell stain using a 695 nm bandpass filter. Living cells can be discriminated from apoptotic and dead cells by the relative intensities of the two emission bands from F2N12S (A and B). In panels C and D, SYTOX AADvanced dead cell stain fluorescence is plotted against a derived ratio parameter from the two emission bands (585/530 nm) of F2N12S. A = apoptotic cells, L = live cells, D = dead cells.

Scatter plot using Violet Ratiometric Membrane Asymmetry Probe and Dead Cell Apoptosis kit showing membrane potential loss using MitoProbe DilC1(5)

Figure 8. Violet Ratiometric Membrane Asymmetry Probe/Dead Cell Apoptosis Kit for apoptosis detection. Control (top row) and 4-hour camptothecin-treated (bottom row) Jurkat cells were stained with 1 µM SYTOX® AADvanced™ Dead Cell Stain, 200 nM F2N12S, and 50 nM MitoProbe™ DiIC1(5). Dead cells were first excluded (histograms) by gating live cells (those that have lower SYTOX® AADvanced™ fluorescence, indicated by bars). Bivariant density plots show a two-parameter apoptosis assay for mitochondrial membrane potential loss (decreased DiIC1(5) fluorescence) and breakdown of membrane asymmetry (smaller F2N12S 585/530 nm fluorescence ratio). The A, L, and D labels on the graphs indicate apoptotic, live, and dead cells, respectively.


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