![Large Data Visualization](/software-em-3d-vis/xtra-library/uploads/2021/02/FedeLDA-md.jpg)
Demo, Misc
24 Feb 2021 - This video tutorial demonstrates how to deal with visualization of large datasets. Learn more
![Patch Extraction Tools for Deep Learning Data Preparation](/software-em-3d-vis/xtra-library/uploads/2021/02/ExtractPatches_Snapshot2-md.png)
Patch Extraction Tools for Deep Learning Data Preparation
Python (pyscro)
22 Feb 2021 - A set of tools dedicated to the preparation of data for training Deep Learning models and reducing annotation time. Learn more
![How to Set Up Two-Sided Clipping](/software-em-3d-vis/xtra-library/uploads/2021/03/clip-md.jpg)
How to Set Up Two-Sided Clipping
Demo
15 Feb 2021 - This tutorial explains how to set up two-sided clipping in order to transition between two visualizations of data. Learn more
![How to Use Camera Orbit and Animate a Rotation](/software-em-3d-vis/xtra-library/uploads/2021/03/orbit-md.jpg)
How to Use Camera Orbit and Animate a Rotation
Demo
15 Feb 2021 - This tutorial explains how to use the Camera Orbit module, and then animate the rotation around an object in the Animation Director. Learn more
![Efficient Graph-based 2D Image Segmentation](/software-em-3d-vis/xtra-library/uploads/2021/01/2021-01-15 12_39_25-Amira - GraphBasedSegmentation_volumescope.hx-md.png)
Efficient Graph-based 2D Image Segmentation
XPand module
12 Feb 2021 - This Xtra implements efficient graph-based image segmentation by Felzenszwalb and Huttenlocher. Learn more
![How to Create a Movie File](/software-em-3d-vis/xtra-library/uploads/2021/03/moviecr-md.jpg)
Demo
10 Feb 2021 - This tutorial explains how to create and export a movie file from the Animation Director. Learn more
![How to Compare Slices Side by Side](/software-em-3d-vis/xtra-library/uploads/2021/03/sidebyside-md.jpg)
How to Compare Slices Side by Side
Demo
10 Feb 2021 - This tutorial explains how to perform a side-by-side comparison of two slices that display different information; for example, of raw data and its corresponding labeled image. Learn more
Python (pyscro)
22 Jan 2021 - This Python script-object allows you to convert a point-cloud object to a spreadsheet object. Learn more
![Non-Standard Python Package Installation Tutorial](/software-em-3d-vis/xtra-library/uploads/2020/09/9-11-2020 10-35-51 PM-md.jpg)
Non-Standard Python Package Installation Tutorial
Demo, Misc
13 Jan 2021 - This Xtra provides a brief video that explains how to install a Python package in a newly created Python environment using pip or edm. Learn more
![FIBSEM Mitochondria Segmentation](/software-em-3d-vis/xtra-library/uploads/2020/11/FIBSEM_Mitochondria_Segmentation_zoom-md.jpg)
FIBSEM Mitochondria Segmentation
Deep learning model
12 Jan 2021 - Pre-trained model for the Deep Learning Prediction module detecting mitochondria in a Focused Ion Beam Scanning Electron Microscope (FIBSEM) data set. Learn more
![Multi-Component Analysis of X-ray Computed Tomography Datasets](/software-em-3d-vis/xtra-library/uploads/2020/11/image-md.jpg)
Multi-Component Analysis of X-ray Computed Tomography Datasets
Recipe (hxrecipe), Project (hx, pgo), Demo, Data, Misc
4 Jan 2021 - The following videos and training material detail the steps taken to automate the analysis of multiple parts in a single X-ray CT volume. Learn more
![Analysis of X-ray CT Calibration Spheres using the Metrology Workroom](/software-em-3d-vis/xtra-library/uploads/2020/11/image-copy-md.jpg)
Analysis of X-ray CT Calibration Spheres using the Metrology Workroom
Demo, Data, Misc
4 Jan 2021 - This video presents how to use the Metrology workroom to analyze calibration spheres used in X-ray Computed Tomography. Learn more
![Thresholding From Mean](/software-em-3d-vis/xtra-library/uploads/2020/12/thresholdingFromMean-2-md.png)
Python (pyscro), Data
4 Jan 2021 - This module performs an adaptive global thresholding of the input image by computing a deviation from the mean of its grayscale values. Learn more
![How to Create and Animate a Camera Path](/software-em-3d-vis/xtra-library/uploads/2021/03/path-md.jpg)
How to Create and Animate a Camera Path
Demo
3 Jan 2021 - This tutorial explains how to create a camera path, and then animate the camera along this path with the Animation Director. Learn more
![How to Animate the Appearance of Objects with the Animation Director](/software-em-3d-vis/xtra-library/uploads/2021/03/AD-md.jpg)
How to Animate the Appearance of Objects with the Animation Director
Demo
3 Jan 2021 - This tutorial explains how to animate the appearance and disappearance of objects with the Animation Director. Learn more
![How to Get Started with the Animation Director](/software-em-3d-vis/xtra-library/uploads/2021/03/GStAD-md.jpg)
How to Get Started with the Animation Director
Demo
3 Jan 2021 - This tutorial demonstrates the basic techniques of animation creation with the Animation Director. Learn more
Tcl
17 Nov 2020 - This module creates a spreadsheet that contains the measurement and annotation data (generated with the Measurement tool) that can be used for further analysis. Learn more
![Marker Based Watershed Recipe](/software-em-3d-vis/xtra-library/uploads/2020/10/snapshot-md.png)
Recipe ISP, IVP, A2D
17 Nov 2020 - A recipe for applying a Marker Based Watershed (as in the Segmentation Editor) from the Project View. Learn more
![Automatic Extraction of Transparent Surface Cross Section](/software-em-3d-vis/xtra-library/uploads/2020/10/Xtra-extractXsection-md.png)
Automatic Extraction of Transparent Surface Cross Section
Python (pyscro), Project (hx, pgo)
20 Oct 2020 - A module for creating partially transparent capping surfaces. Learn more
Auto Threshold for Multi-Thresholding
Tcl
19 Oct 2020 - The combination of Auto Thresholding and Multi-Thresholding makes it easy to create precise surfaces without additional smoothing, using the Generate Surface's smoothing option "Existing Weights". Learn more
![Volume Projection](/software-em-3d-vis/xtra-library/uploads/2020/09/snapshotVolumeProjection-md.png)
Python (pyscro)
19 Oct 2020 - This Xtra creates a volume projection along any orthogonal axis using arithmetic operations. Learn more