![Bookmarks Manager](/software-em-3d-vis/xtra-library/uploads/2020/12/02-Dec-20 10-31-56-md.jpg)
Python (pyscro)
18 Nov 2021 - Add bookmarks to your project, including status and camera, so you can easily retrieve a given visualization. You can then navigate through the bookmarks. Learn more
![Landmark based Data Alignment](/software-em-3d-vis/xtra-library/uploads/2021/08/LandmarkAlign-md.png)
Tcl, Demo
18 Nov 2021 - This module can be used to facilitate the alignment of datasets using pairs of landmarks. The video tutorial demonstrates this technique. Learn more
![Inter Time Steps Recipe Player](/software-em-3d-vis/xtra-library/uploads/2021/09/InterTimeStepsRecipePlayer-md.png)
Inter Time Steps Recipe Player
Recipe (hxrecipe), Python (pyscro), Project (hx, pgo), Demo, Data
18 Nov 2021 - The Inter Time Steps Recipe Player module executes a two-input recipe to a specific pair of two successive time steps of a time series dataset, or to all its pairs of two successive time steps. Learn more
![How to Script the Instantiation of a Python Script Object Xtra](/software-em-3d-vis/xtra-library/uploads/2021/02/Xtra-2-small-md.jpg)
How to Script the Instantiation of a Python Script Object Xtra
Python (pyscro)
9 Sep 2021 - This Xtra provides a script template that can be used to instantiate a Python script object Xtra from the Python console or from a Python script. Learn more
Using Tcl Command Module for Multi-File OBJ Export
Tcl, Project (hx, pgo)
7 Sep 2021 - The Tcl Command Module makes it easy to export the surfaces of single objects from a multi-object surface as OBJ (Wavefront) files. Learn more
![Browse TensorBoard of old Deep Learning Training sessions](/software-em-3d-vis/xtra-library/uploads/2021/04/TensorBoard_FeatureImage-md.png)
Browse TensorBoard of old Deep Learning Training sessions
Deep learning model, Python (pyscro)
21 May 2021 - This Xtra contains a module that allows you to browse TensorBoard logs from previous Deep Learning Training sessions. Learn more
Python (pyscro)
29 Mar 2021 - AddDataToPointCloud writes data defined on mesh-nodes into a point-cloud with an equal number of points. Together with the "PointCloudToSpreadsheet" Xtra, this module can be used, for example, to export the results created by the Surface Distance module. Learn more
![Extract Oriented Labels](/software-em-3d-vis/xtra-library/uploads/2021/02/ExtractOrientedLabels-2-md.png)
Python (pyscro), Project (hx, pgo)
29 Mar 2021 - The Extract Oriented Labels module extracts every label from the input label image, and resamples each image along its own main orientations (or eigenvectors). Learn more
![Image Segmentation Evaluation Using Standard Metrics](/software-em-3d-vis/xtra-library/uploads/2021/01/2021-01-26 21_53_47-192.168.1.205 - Remote Desktop Connection-md.png)
Image Segmentation Evaluation Using Standard Metrics
Python (pyscro), Project (hx, pgo)
8 Mar 2021 - Segmentation evaluation using standard precision, and recall metrics for comparing two segmentation labels. Learn more
![Getting Started with Flatten Module](/software-em-3d-vis/xtra-library/uploads/2020/11/Fig16-md.png)
Getting Started with Flatten Module
Project (hx, pgo), Demo
8 Mar 2021 - This tutorial demonstrates use of the Flatten experimental module to create interactive contours by defining the unfolding surface while respecting the constraints of the module inputs. Learn more
![Large Data Visualization](/software-em-3d-vis/xtra-library/uploads/2021/02/FedeLDA-md.jpg)
Demo, Misc
24 Feb 2021 - This video tutorial demonstrates how to deal with visualization of large datasets. Learn more
![Patch Extraction Tools for Deep Learning Data Preparation](/software-em-3d-vis/xtra-library/uploads/2021/02/ExtractPatches_Snapshot2-md.png)
Patch Extraction Tools for Deep Learning Data Preparation
Python (pyscro)
22 Feb 2021 - A set of tools dedicated to the preparation of data for training Deep Learning models and reducing annotation time. Learn more
![Efficient Graph-based 2D Image Segmentation](/software-em-3d-vis/xtra-library/uploads/2021/01/2021-01-15 12_39_25-Amira - GraphBasedSegmentation_volumescope.hx-md.png)
Efficient Graph-based 2D Image Segmentation
XPand module
12 Feb 2021 - This Xtra implements efficient graph-based image segmentation by Felzenszwalb and Huttenlocher. Learn more
Python (pyscro)
22 Jan 2021 - This Python script-object allows you to convert a point-cloud object to a spreadsheet object. Learn more
![Multi-Component Analysis of X-ray Computed Tomography Datasets](/software-em-3d-vis/xtra-library/uploads/2020/11/image-md.jpg)
Multi-Component Analysis of X-ray Computed Tomography Datasets
Recipe (hxrecipe), Project (hx, pgo), Demo, Data, Misc
4 Jan 2021 - The following videos and training material detail the steps taken to automate the analysis of multiple parts in a single X-ray CT volume. Learn more
![Thresholding From Mean](/software-em-3d-vis/xtra-library/uploads/2020/12/thresholdingFromMean-2-md.png)
Python (pyscro), Data
4 Jan 2021 - This module performs an adaptive global thresholding of the input image by computing a deviation from the mean of its grayscale values. Learn more
Tcl
17 Nov 2020 - This module creates a spreadsheet that contains the measurement and annotation data (generated with the Measurement tool) that can be used for further analysis. Learn more
![Marker Based Watershed Recipe](/software-em-3d-vis/xtra-library/uploads/2020/10/snapshot-md.png)
Recipe ISP, IVP, A2D
17 Nov 2020 - A recipe for applying a Marker Based Watershed (as in the Segmentation Editor) from the Project View. Learn more
![Automatic Extraction of Transparent Surface Cross Section](/software-em-3d-vis/xtra-library/uploads/2020/10/Xtra-extractXsection-md.png)
Automatic Extraction of Transparent Surface Cross Section
Python (pyscro), Project (hx, pgo)
20 Oct 2020 - A module for creating partially transparent capping surfaces. Learn more
Auto Threshold for Multi-Thresholding
Tcl
19 Oct 2020 - The combination of Auto Thresholding and Multi-Thresholding makes it easy to create precise surfaces without additional smoothing, using the Generate Surface's smoothing option "Existing Weights". Learn more
![Volume Projection](/software-em-3d-vis/xtra-library/uploads/2020/09/snapshotVolumeProjection-md.png)
Python (pyscro)
19 Oct 2020 - This Xtra creates a volume projection along any orthogonal axis using arithmetic operations. Learn more