![Segmentation+ Workroom Tutorial](/software-em-3d-vis/xtra-library/uploads/2024/05/UI screencapture-md.png)
Segmentation+ Workroom Tutorial
Demo
2 May 2024 - Discover the Segmentation+ workroom, a powerful tool for interactive 3D image segmentation. This tutorial offers a comprehensive overview of the segmentation process, covering essential principles and tools. Learn more
![How to Use the Arithmetic Module](/software-em-3d-vis/xtra-library/uploads/2023/12/Arith-md.jpg)
How to Use the Arithmetic Module
Demo
2 Jan 2024 - This series of video tutorials introduces the Arithmetic module and examples of use cases. Learn more
![AI Assisted Tool for CryoEM Segmentation](/software-em-3d-vis/xtra-library/uploads/2023/02/DL0-md.jpg)
AI Assisted Tool for CryoEM Segmentation
Demo, Data
28 Nov 2022 - Here we provide a tutorial to interactively segment a cellular cryo-electron tomography image using the AI assisted segmentation tool of the Segmentation+ workroom. Learn more
![Divide Full Data Volume into Defined Sub-Volume Blocks for Label Analysis](/software-em-3d-vis/xtra-library/uploads/2021/10/snapshot-md.jpg)
Divide Full Data Volume into Defined Sub-Volume Blocks for Label Analysis
Recipe (hxrecipe), Project (hx, pgo), Demo
1 Sep 2022 - This Xtra demonstrates how to use the Arithmetic module to divide a whole volume data into defined sub-volume blocks and then perform label analysis on the blocks. Learn more
![How to Install the Deep Learning Python Environment](/software-em-3d-vis/xtra-library/uploads/2022/07/DLInstall-md.png)
How to Install the Deep Learning Python Environment
Python (pyscro), Demo, Misc
29 Jul 2022 - Two videos explain how to install the dependencies needed to use Deep Learning within Amira 3D, Avizo 3D, or Pergeos. One covers the standard install and the other is for users without an internet connection. Learn more
![How to Calculate Surface Area of a Custom ROI](/software-em-3d-vis/xtra-library/uploads/2022/07/CustomROI-md.png)
How to Calculate Surface Area of a Custom ROI
Demo, Data
29 Jul 2022 - This tutorial elaborates how to draw a region of interest on a surface. With this ROI, you can calculate its surface area. Learn more
![How to Calculate Surface Area](/software-em-3d-vis/xtra-library/uploads/2022/07/SurfaceArea-md.png)
Demo
29 Jul 2022 - Three approaches are shown for extracting a surface and measuring the surface area of its geometry. Learn more
![How to Segment Cavities Using the Compute Ambient Occlusion Module](/software-em-3d-vis/xtra-library/uploads/2022/04/CAO-0-md.jpg)
How to Segment Cavities Using the Compute Ambient Occlusion Module
Demo
12 Apr 2022 - This tutorial demonstrates how to segment pores or cavities using the Compute Ambient Occlusion module. Learn more
![Slab View](/software-em-3d-vis/xtra-library/uploads/2022/09/SlabView3-md.png)
Python (pyscro), Project (hx, pgo)
24 Feb 2022 - The Slab View display module allows you to display only a slab from any kind of 3D visualization. Learn more
![How to Use the Surface View Module and Create Elaborate Surface Renderings](/software-em-3d-vis/xtra-library/uploads/2022/04/surfview2-md.jpg)
How to Use the Surface View Module and Create Elaborate Surface Renderings
Demo
30 Dec 2021 - This short video demonstrates the basic use of the Surface View module, and how to combine several Surface View modules to create elaborate renderings. Learn more
![How to Customize Amira-Avizo with moduleExtender](/software-em-3d-vis/xtra-library/uploads/2021/10/Xtra_Customize_with_moduleExtender_title-md.png)
How to Customize Amira-Avizo with moduleExtender
Tcl, Misc
25 Nov 2021 - Are there module settings you always need to change during your daily work? This Xtra describes how you can permanently change default settings of modules in Amira-Avizo. Learn more
![Porosity Volume Fraction Analysis](/software-em-3d-vis/xtra-library/uploads/2019/10/Volume_Fraction-md.jpg)
Porosity Volume Fraction Analysis
Project (hx, pgo), Demo, Data
18 Nov 2021 - This tutorial demonstrates the steps to quantify porosity volume fraction and distribution. Learn more
![Landmark based Data Alignment](/software-em-3d-vis/xtra-library/uploads/2021/08/LandmarkAlign-md.png)
Tcl, Demo
18 Nov 2021 - This module can be used to facilitate the alignment of datasets using pairs of landmarks. The video tutorial demonstrates this technique. Learn more
![Inter Time Steps Recipe Player](/software-em-3d-vis/xtra-library/uploads/2021/09/InterTimeStepsRecipePlayer-md.png)
Inter Time Steps Recipe Player
Recipe (hxrecipe), Python (pyscro), Project (hx, pgo), Demo, Data
18 Nov 2021 - The Inter Time Steps Recipe Player module executes a two-input recipe to a specific pair of two successive time steps of a time series dataset, or to all its pairs of two successive time steps. Learn more
![CMake Usage to Create XPand C++ API Modules](/software-em-3d-vis/xtra-library/uploads/2021/11/cmake-md.png)
CMake Usage to Create XPand C++ API Modules
Demo
18 Nov 2021 - Starting with version 2021.2, the use of CMake is required to create solutions that implement the Amira Avizo 3D Pro extension modules with the XPand C ++ API. This video demonstrates what needs to be done to create a solution for MS Visual Studio. Learn more
![How to Set the Colormap for Ortho Slice and Volume Rendering](/software-em-3d-vis/xtra-library/uploads/2021/11/cmap1-md.jpg)
How to Set the Colormap for Ortho Slice and Volume Rendering
Demo
18 Nov 2021 - This tutorial is an introduction to the basic principle and use of colormaps. Learn more
![How to Create a Particles Segmentation Recipe in Avizo2D Software](/software-em-3d-vis/xtra-library/uploads/2021/11/image-md.jpg)
How to Create a Particles Segmentation Recipe in Avizo2D Software
Demo
18 Nov 2021 - This tutorial demonstrates how to use the Image Recipe Designer (formerly 'ISP') workroom in Avizo2D software to create and run a recipe for particles segmentation. Learn more
![Incremental Digital Volume Correlation Tutorial](/software-em-3d-vis/xtra-library/uploads/2022/04/IncDVC2-md.jpg)
Incremental Digital Volume Correlation Tutorial
Demo
14 Sep 2021 - This tutorial explains how to use the new features of the Digital Volume Correlation extension to perform a series of incremental measurements. Learn more
![How to Use the Image Recipe Designer Workroom](/software-em-3d-vis/xtra-library/uploads/2021/07/ISP0-md.jpg)
How to Use the Image Recipe Designer Workroom
Recipe ISP, IVP, A2D, Demo
14 Sep 2021 - This tutorial demonstrates how to use the Image Recipe Designer (formerly 'Image Stack Processing' or 'ISP') workroom, an intuitive 2D workroom for automating image processing workflows in 3D. Learn more
![How to Overlay Images Using the Color Wash Module](/software-em-3d-vis/xtra-library/uploads/2021/07/colorwash-md.jpg)
How to Overlay Images Using the Color Wash Module
Demo
14 Sep 2021 - This short video demonstrates how to use the Color Wash module to overlay label colors onto a greyscale image. Learn more
![How to Register and Merge Images](/software-em-3d-vis/xtra-library/uploads/2021/07/register-md.jpg)
How to Register and Merge Images
Demo
14 Sep 2021 - This short tutorial demonstrates how to use the Register Images and Merge modules to align and merge two images. Learn more