![Segmentation of Pathological Osteocytes in an Undecalcified Piece of Mouse Bone using Amira-Avizo2D](/software-em-3d-vis/xtra-library/uploads/2020/07/ImageOsteocytes-md.png)
Segmentation of Pathological Osteocytes in an Undecalcified Piece of Mouse Bone using Amira-Avizo2D
Recipe ISP, IVP, A2D
3 Jul 2020 - This is a workflow to segment out osteocytes in mouse bone sample using Amira-Avizo2D. Learn more
![Porosity and Permeability by blocks](/software-em-3d-vis/xtra-library/uploads/2020/02/Perm-md.png)
Porosity and Permeability by blocks
Tcl
3 Jul 2020 - Splits a binary pore space into blocks and output one porosity and permeability value for every block Learn more
![Extracting and Visualizing Local Statistics from Fibrous Materials](/software-em-3d-vis/xtra-library/uploads/2020/04/snapshot-md.jpg)
Extracting and Visualizing Local Statistics from Fibrous Materials
Project (hx, pgo)
3 Jul 2020 - This XTRA entry discusses the application of the “Spatial Graph Local Statistics” to extract statistical information from traced fibers in a fibrous material. The sample is 50% glass fiber-reinforced polymer (GFRP), courtesy of EMS Grivory. Learn more
![Interactive Top-Hat by Reconstruction](/software-em-3d-vis/xtra-library/uploads/2022/05/imageITH-2-md.jpg)
Interactive Top-Hat by Reconstruction
XPand module
3 Jul 2020 - This module provides an interactive Top-Hat segmentation that prevents the segmentation of "false positive" porosity on the edges. Learn more
![XFiber Automation](/software-em-3d-vis/xtra-library/uploads/2020/02/FrontPageImage-md.png)
Tcl, Project (hx, pgo), Data
17 Jun 2020 - To make use of XFiber, the user usually needs to input many parameters. This package provides 2 tools to ease Xfiber process by presetting Cylinder Correlation and Auto Trace Correlation modules values. Learn more
![Avizo User's Guide translated to Japanese](/software-em-3d-vis/xtra-library/uploads/2021/02/Xtra-2-small-md.jpg)
Avizo User's Guide translated to Japanese
Demo, Misc
11 May 2020 - You will find here a selection of Avizo tutorials translated to Japanese. Learn more
![Molar Segmentation Using Watershed, Top-Hat, and Surface Generation](/software-em-3d-vis/xtra-library/uploads/2020/05/Snapshot_Example_2viewers-md.png)
Molar Segmentation Using Watershed, Top-Hat, and Surface Generation
Project (hx, pgo), Demo, Data
11 May 2020 - Data, tutorial, and complete project for segmenting a CT-scanned human molar artifact. The tutorial and project cover advanced image segmentation and surface generation. Learn more
![Extract Label](/software-em-3d-vis/xtra-library/uploads/2020/02/snapshot-extract-label-2-md.png)
Python (pyscro)
11 May 2020 - This module extracts a specified label region by its ID. Learn more
![Copy Measure Annotation Settings](/software-em-3d-vis/xtra-library/uploads/2020/01/CopyMeasureAnnotationSettings2-md.png)
Copy Measure Annotation Settings
Tcl
15 Apr 2020 - This Tcl script-object can be used to copy visualisation settings from one measure to all others in a Measurement module. It is also possible to save/load settings to/from a text file. Learn more
![Caption From Port](/software-em-3d-vis/xtra-library/uploads/2024/04/capFport-md.png)
Tcl
15 Apr 2020 - Use this module to fill the text field of a Caption module with the value of a port of another module. Learn more
![Scale-Space Laplacian of Gaussian Filter](/software-em-3d-vis/xtra-library/uploads/2019/12/clamcleat_LoG-md.png)
Scale-Space Laplacian of Gaussian Filter
Python (pyscro)
15 Apr 2020 - Image processing filter enhancing spherical or blob like objects of various sizes. Learn more
![Amira User's Guide translated to Japanese](/software-em-3d-vis/xtra-library/uploads/2021/02/Xtra-2-small-md.jpg)
Amira User's Guide translated to Japanese
Demo, Misc
29 Jan 2020 - You will find here a large selection of Amira tutorials translated to Japanese. Learn more
Tcl
13 Dec 2019 - This module creates label annotations from the result of a Label Analysis with the help of the Measurement tool. Learn more
![Average Interleaved Data](/software-em-3d-vis/xtra-library/uploads/2019/10/10-18-2019 1-21-10 PM-md.png)
Python (pyscro), Project (hx, pgo)
21 Oct 2019 - The purpose of this python script object is to average interleaved data. Learn more
![2D SEM (White) Grain Segmentation](/software-em-3d-vis/xtra-library/uploads/2019/10/21-10-2019 07-36-34-md.png)
2D SEM (White) Grain Segmentation
Recipe (hxrecipe), Data
21 Oct 2019 - This recipe segments and calculate the physical attributes of the white grains in the 2D SEM image Learn more
![Load a Numpy array into PerGeos-Amira-Avizo using the Python API](/software-em-3d-vis/xtra-library/uploads/2019/10/6-28-2019 2-38-06 PM-md.jpg)
Load a Numpy array into PerGeos-Amira-Avizo using the Python API
Python (pyscro)
21 Oct 2019 - This script simply reads and loads numpy arrays in a user specified directory into PerGeos/Amira-Avizo as an image. Learn more
![Random Forests for Multiclass Segmentation using Python API in PerGeos](/software-em-3d-vis/xtra-library/uploads/2019/10/IPM_python_tutorial_pergeos-md.png)
Random Forests for Multiclass Segmentation using Python API in PerGeos
Python (pyscro), Project (hx, pgo), Data
21 Oct 2019 - Simple demonstration of feature computation where the feature vector contains intensity and 2D eigenvalues (X & Y). This example uses random forests implementation from the sklearn package. Learn more
![Length Distribution Analysis](/software-em-3d-vis/xtra-library/uploads/2019/10/Length Distribution Analysis Image-md.jpg)
Recipe (hxrecipe), Project (hx, pgo), Demo, Data
21 Oct 2019 - This tutorial demonstrated how to quantify thickness distribution along the length Learn more
![Porosity Clustering Analysis and Distance to Surface](/software-em-3d-vis/xtra-library/uploads/2019/10/Clustering-2-md.jpg)
Porosity Clustering Analysis and Distance to Surface
Recipe (hxrecipe), Project (hx, pgo), Demo, Data
21 Oct 2019 - This tutorial demonstrates the steps necessary to quantify porosity distribution and perform a pore distance to surface analysis. Learn more
![Cracks and Cavities Segmentation in CT Data](/software-em-3d-vis/xtra-library/uploads/2019/10/battery_cracks-md.png)
Cracks and Cavities Segmentation in CT Data
Recipe (hxrecipe), Data
21 Oct 2019 - This recipe is useful to segment data with cracks, pores, or cavities. Learn more
![Feature segmentation for non-uniform illumination and low-contrast images](/software-em-3d-vis/xtra-library/uploads/2019/10/FSLCI-md.jpg)
Feature segmentation for non-uniform illumination and low-contrast images
Recipe (hxrecipe)
17 Oct 2019 - The recipe lets you segment small features on images with non-uniform illumination and low contrast. Learn more