How to Use the Image Recipe Designer Workroom
Recipe ISP, IVP, A2D, Demo
14 Sep 2021 - This tutorial demonstrates how to use the Image Recipe Designer (formerly 'Image Stack Processing' or 'ISP') workroom, an intuitive 2D workroom for automating image processing workflows in 3D. Learn more
How to Overlay Images Using the Color Wash Module
Demo
14 Sep 2021 - This short video demonstrates how to use the Color Wash module to overlay label colors onto a greyscale image. Learn more
How to Register and Merge Images
Demo
14 Sep 2021 - This short tutorial demonstrates how to use the Register Images and Merge modules to align and merge two images. Learn more
How to Use the Transform Editor
Demo
14 Sep 2021 - This tutorial introduces the concept of geometric transformation in Amira-Avizo and demonstrates data alignment with the Transform Editor. Learn more
How to Create a Custom Label Colormap
Demo
14 Sep 2021 - This short video explains how to create and export a label colormap from the Segmentation Editor. Learn more
How to Change the Label Colormap to Display a Label Field
Demo
14 Sep 2021 - This short video explains how to set an appropriate colormap for label fields with a large number of labels. Learn more
How to Edit a Colormap from the Colormap Editor
Demo
14 Sep 2021 - This tutorial demonstrates how to use the Colormap Editor. Learn more
Demo
14 Sep 2021 - This short tutorial presents the different options to save a project. Learn more
How to Script the Instantiation of a Python Script Object Xtra
Python (pyscro)
9 Sep 2021 - This Xtra provides a script template that can be used to instantiate a Python script object Xtra from the Python console or from a Python script. Learn more
Using Tcl Command Module for Multi-File OBJ Export
Tcl, Project (hx, pgo)
7 Sep 2021 - The Tcl Command Module makes it easy to export the surfaces of single objects from a multi-object surface as OBJ (Wavefront) files. Learn more
Data
8 Jul 2021 - This Xtra provides the data used in the tutorials for the Xplore5D extension, available in Amira-Avizo 2021.1 Learn more
XPand module
29 Jun 2021 - The Split and Merge Segments module merges the two most representative segments at the intersection points of a graph structure and detaches the others. Learn more
More Resources on Amira-Avizo Learning Center YouTube Playlist
Demo, Misc
4 Jun 2021 - This Xtra provides links to Amira-Avizo Learning Center YouTube playlist. Learn more
Browse TensorBoard of old Deep Learning Training sessions
Deep learning model, Python (pyscro)
21 May 2021 - This Xtra contains a module that allows you to browse TensorBoard logs from previous Deep Learning Training sessions. Learn more
Python (pyscro)
29 Mar 2021 - AddDataToPointCloud writes data defined on mesh-nodes into a point-cloud with an equal number of points. Together with the "PointCloudToSpreadsheet" Xtra, this module can be used, for example, to export the results created by the Surface Distance module. Learn more
Python (pyscro), Project (hx, pgo)
29 Mar 2021 - The Extract Oriented Labels module extracts every label from the input label image, and resamples each image along its own main orientations (or eigenvectors). Learn more
Tcl
8 Mar 2021 - This Xtra contains a script module to fit molecular models to density maps, a process frequently called "docking". Learn more
Image Segmentation Evaluation Using Standard Metrics
Python (pyscro), Project (hx, pgo)
8 Mar 2021 - Segmentation evaluation using standard precision, and recall metrics for comparing two segmentation labels. Learn more
Getting Started with Flatten Module
Project (hx, pgo), Demo
8 Mar 2021 - This tutorial demonstrates use of the Flatten experimental module to create interactive contours by defining the unfolding surface while respecting the constraints of the module inputs. Learn more
Demo, Misc
24 Feb 2021 - This video tutorial demonstrates how to deal with visualization of large datasets. Learn more
Patch Extraction Tools for Deep Learning Data Preparation
Python (pyscro)
22 Feb 2021 - A set of tools dedicated to the preparation of data for training Deep Learning models and reducing annotation time. Learn more