Overview of protein extraction

Protein extraction is a critical initial step in biochemistry and molecular biology that encompasses a wide range of techniques and reagents to isolate and purify specific proteins from biological samples. The choice of protein extraction technique and reagent depends largely on the sample type, localization of the protein, desired yield, need of preservation, and downstream application. 

Thermo Fisher Scientific offers a range of protein extraction reagents for cell lysis, organelle isolation, membrane protein extraction, and protease and phosphatase inhibition, each designed to support your diverse experimental needs. By choosing the right protein extraction reagent, you can help ensure high-quality, reproducible results for your experiment and ultimately enable the integrity and yield of your desired protein for downstream applications such as western blot, ELISA, EMSA, reporter assays, mass spectrometry, and IP.

Learn more: Protein extraction


Protein extraction reagents

Selection of a suitable cell lysis buffer is based on the sample type and downstream application. Our cell lysis buffers are formulated to efficiently disrupt cells and release proteins, providing optimal conditions for the extraction of proteins from a variety of sample types.

Highlighted products:

See all cell lysis buffers

Detergents are essential for the solubilization of proteins by disrupting cell membranes and aiding in the release of proteins from various cellular compartments. Our selection of detergents is optimized to achieve efficient protein solubilization while maintaining protein stability.

Highlighted products:

See all protein solubilization detergents

Protease and phosphatase inhibitors play a crucial role in preventing protein degradation during extraction, helping ensure the preservation of protein integrity and activity throughout the extraction process.

Highlighted products:

See all protease and phosphatase inhibitors


Specialized protein extraction reagents

Specialized reagents and protocols are available for the separation of cellular components and the isolation of organelles. These reagents enable researchers to enrich specific cell fractions and organelles for analysis and downstream applications.

Highlighted products:

See all cell fractionation and organelle isolation reagents

For the specific extraction of membrane-bound proteins, we offer specialized reagents designed to effectively solubilize and isolate these proteins, which are often challenging to extract using conventional methods.

Highlighted products:

See all membrane protein extraction and isolation reagents

Benefits of highlights of protein extraction reagents

  • Optimized—formulations designed to maximize protein yield and preserve protein activity
  • Efficient—contains minimal cross-contamination between subcellular fractions
  • Gentle—eliminates the need for mechanical cell disruption for most sample types
  • Compatible—extracts can be used directly in most downstream applications

Simple overview of sample type and protein extraction reagent or kit

 Sample typeGoalRecommended protein extraction reagent or kit
single cellPrimary or cultured mammalian cells or tissuesTotal protein extractionRIPA buffer
IP Lysis buffer
M-PER
T-PER
N-PER
cell structureCultured mammalian cells or tissuesSubcellular fractions and organellesNE-PER Nuclear and Cytoplasmic Extraction Reagents
Subcellular Protein Fractionation Kits
Mitochondria Isolation Kits
Lysosome enrichment kit
Syn-PER Synaptic Protein Extraction Reagent
Membrane-bound proteinsG Protein-Coupled Receptors (GPCR) Extraction Reagent
Mem-PER Membrane Protein Extraction
Cell Surface Protein Isolation Kit
bacteria cellsBacterial cellsTotal protein extractionB-PER Complete Bacterial Protein Extraction Reagent
yeast cellYeast cellsTotal protein extractionY-PER Yeast Protein Extraction Reagent
insect baculovirusInsect cells (baculovirus)Total protein extractionY-PER Yeast Protein Extraction Reagent
plant leaves and stemPlant tissues (leaf, stem, root, flower)Total protein extractionPlant Total Protein Extraction Kit

Discover protein preparation tools

Protein sample preparation technical handbook

The Protein Preparation Handbook provides useful information on our broad selection of reagents and tools for protein extraction, clean-up, immunoprecipitation, and purification. Practical information, selection guides, and relevant data are included to help you improve your protein yield and downstream analysis.

protein preparation handbook

Protein sample preparation eLearning course

This modular, animated, and narrated eLearning course was developed to provide a succinct, contextual summary of common laboratory methods and techniques required to achieve optimal results in protein assays and experiments. There are knowledge checks throughout the course to test what you have learned.

eLearning courses

Stylesheet for Classic Wide Template adjustments
Hero banner dark gradient overlay

For Research Use Only. Not for use in diagnostic procedures.