![Slice by Slice Thinning](/software-em-3d-vis/xtra-library/uploads/2022/03/3-16-2022 11-53-19 AM-md.jpg)
XPand module
6 Apr 2022 - This module performs the thinning of a binary image slice-by-slice. Learn more
![How to Set the Colormap for Ortho Slice and Volume Rendering](/software-em-3d-vis/xtra-library/uploads/2021/11/cmap1-md.jpg)
How to Set the Colormap for Ortho Slice and Volume Rendering
Demo
18 Nov 2021 - This tutorial is an introduction to the basic principle and use of colormaps. Learn more
![How to Create a Particles Segmentation Recipe in Avizo2D Software](/software-em-3d-vis/xtra-library/uploads/2021/11/image-md.jpg)
How to Create a Particles Segmentation Recipe in Avizo2D Software
Demo
18 Nov 2021 - This tutorial demonstrates how to use the Image Recipe Designer (formerly 'ISP') workroom in Avizo2D software to create and run a recipe for particles segmentation. Learn more
![FIBSEM Mitochondria Segmentation](/software-em-3d-vis/xtra-library/uploads/2020/11/FIBSEM_Mitochondria_Segmentation_zoom-md.jpg)
FIBSEM Mitochondria Segmentation
Deep learning model
12 Jan 2021 - Pre-trained model for the Deep Learning Prediction module detecting mitochondria in a Focused Ion Beam Scanning Electron Microscope (FIBSEM) data set. Learn more
![Relative Area Fraction for Amira-Avizo2D](/software-em-3d-vis/xtra-library/uploads/2020/10/HowTo_RelativeAreaFraction-md.jpg)
Relative Area Fraction for Amira-Avizo2D
Recipe ISP, IVP, A2D, Python (pyscro), Data, Misc
5 Oct 2020 - This Xtra provides a module to help compute the area fraction of a label over the area of another label in Amira-Avizo2D. Learn more
![AMIRA_LOCAL Setup Tutorial](/software-em-3d-vis/xtra-library/uploads/2020/09/Clipboard02-md.jpg)
Demo
5 Oct 2020 - This Xtra provides a brief video that explains how to set up an AMIRA_LOCAL path on Windows 10. Learn more
![Segmentation of Pathological Osteocytes in an Undecalcified Piece of Mouse Bone using Amira-Avizo2D](/software-em-3d-vis/xtra-library/uploads/2020/07/ImageOsteocytes-md.png)
Segmentation of Pathological Osteocytes in an Undecalcified Piece of Mouse Bone using Amira-Avizo2D
Recipe ISP, IVP, A2D
3 Jul 2020 - This is a workflow to segment out osteocytes in mouse bone sample using Amira-Avizo2D. Learn more
![How to Use Deep Learning Models in Amira-Avizo2D Analyzer](/software-em-3d-vis/xtra-library/uploads/2019/09/avizo2DAI-2-md.jpg)
How to Use Deep Learning Models in Amira-Avizo2D Analyzer
Recipe ISP, IVP, A2D, Deep learning model, Data
3 Oct 2019 - Examples showing how to use AI (deep learning models) in an Analyzer recipe (hxisp). Learn more
![How to Batch Process an Image Recipe on a Set of 2D Images with Amira-Avizo2D](/software-em-3d-vis/xtra-library/uploads/2019/06/front-7-md.png)
How to Batch Process an Image Recipe on a Set of 2D Images with Amira-Avizo2D
Recipe ISP, IVP, A2D, Data
18 Sep 2019 - Example of a batch file to perform batch processing on a set of porous silicon SEM images. Learn more
![Three Phase Ti Segmentation](/software-em-3d-vis/xtra-library/uploads/2019/07/front-3-md.png)
Recipe ISP, IVP, A2D, Data
24 Jul 2019 - Alpha, Borides, Beta segmentation of FIB Serial Section Dataset of Ti Alloy with Borides Learn more
![Plates in Ti-62222](/software-em-3d-vis/xtra-library/uploads/2019/07/front-2-md.png)
Recipe ISP, IVP, A2D, Data
24 Jul 2019 - FIB Serial Section of Ti-62222 Learn more
![Particles identification in Nickel-Base Superalloy](/software-em-3d-vis/xtra-library/uploads/2019/07/front-md.png)
Particles identification in Nickel-Base Superalloy
Recipe ISP, IVP, A2D, Python (pyscro), Data
24 Jul 2019 - FIB Serial Section of Particles in Nickel-Base Superalloy Learn more
![Getting Started with Deep Learning Training for Image Segmentation](/software-em-3d-vis/xtra-library/uploads/2021/07/Xtra_FeatureImage-md.png)
Getting Started with Deep Learning Training for Image Segmentation
Deep learning model, Project (hx, pgo), Data
27 Jun 2019 - Model and companion project for the Deep Learning tutorial. Learn more
![Size distribution of Nb-Cu nanoparticles](/software-em-3d-vis/xtra-library/uploads/2019/06/front-8-md.png)
Size distribution of Nb-Cu nanoparticles
Recipe ISP, IVP, A2D, Data
26 Jun 2019 - The recipe segments the Nb particles and the Cu particles. Learn more
![Detecting Pores in Porous Silicon](/software-em-3d-vis/xtra-library/uploads/2019/06/front-7-md.png)
Detecting Pores in Porous Silicon
Recipe ISP, IVP, A2D, Data
26 Jun 2019 - The recipe detects pores in porous silicon. Learn more
![Porosity in a Battery Separator](/software-em-3d-vis/xtra-library/uploads/2019/06/front-5-md.png)
Porosity in a Battery Separator
Recipe ISP, IVP, A2D, Data
26 Jun 2019 - The recipe classifies the pores in a battery separator (SEM image). Learn more
![Porosity in a Polymer Divider](/software-em-3d-vis/xtra-library/uploads/2019/06/front-6-md.png)
Recipe ISP, IVP, A2D, Demo, Data
26 Jun 2019 - The recipe detects pores in a polymer divider (SEM image). Learn more
![Particle Agglomeration](/software-em-3d-vis/xtra-library/uploads/2019/06/front-4-md.png)
Recipe ISP, IVP, A2D, Data
26 Jun 2019 - The recipe segments particles that are touching each other, and individual ones. Learn more
![Automated Sizing of Large Area Nanoparticles](/software-em-3d-vis/xtra-library/uploads/2019/06/front-2-md.png)
Automated Sizing of Large Area Nanoparticles
Recipe ISP, IVP, A2D, Python (pyscro)
25 Jun 2019 - The recipe segments large area Pt-Rh nanoparticles at high resolution (TEM image). Learn more
![Au-Ni-Cl Nanoparticles](/software-em-3d-vis/xtra-library/uploads/2019/06/front-3-md.png)
Recipe ISP, IVP, A2D
25 Jun 2019 - This recipe segments nanoparticles of different element from an EDS map. Learn more
![BSE SEM Denoiser](/software-em-3d-vis/xtra-library/uploads/2019/08/FeatureImage_Denoiser-2-md.png)
Deep learning model
21 Jun 2019 - U-Net model for denoising back-scattered SEM images. Learn more